PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010104324.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 275aa    MW: 29593.5 Da    PI: 6.2753
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010104324.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000299121123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C  C + F++   L  H+++H
  XP_010104324.1  99 YTCAFCRREFRSAQALGGHMNVH 121
                     9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.26E-696126No hitNo description
PROSITE profilePS5015711.01199126IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MATEFGLLSL THLHNLAQNQ DQNQDQLNPN ITINNTSTTS SNITTTSTSA TIGTTCTDIA  60
SRMWNPKPHQ AEEDDSWEVR AFAEDTGNVM GMTWPPRSYT CAFCRREFRS AQALGGHMNV  120
HRRDRARLHQ VIPPNSIINH PSAAATAAVA AATAATSSST PTSSSFLIPT GEFVAGGGGL  180
CLLYQLPNPN GAYGCSESPS PSTVPSVSSY PPHNLLRPPF APSVNFRPGG YNNARRSRHD  240
QYHPNRAEEA LESAENGGDE ELDLELRLGH GPTPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2l1o_A3e-1394121229Transcriptional regulator SUPERMAN
1njq_A3e-1394121229superman protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104324.10.0Transcriptional regulator SUPERMAN
TrEMBLW9RN630.0W9RN63_9R
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-30C2H2 family protein